Issues

• can't save session after creating a subnetwork

  BaderLab/EnrichmentMapApp#558 · Filter by author risserlin opened on Jan 29, 2026
  2

• EnrichmentMap - Cannot parse line 2 of enrichment file

  BaderLab/EnrichmentMapApp#557 · Filter by author nmaun053 opened on Dec 12, 2025
  5

• Combine enrichmentMap plot and network plot

  BaderLab/EnrichmentMapApp#555 · Filter by author gharsallitarek opened on Dec 10, 2024
  2

• Building Enrichment Map error

  BaderLab/EnrichmentMapApp#554 · Filter by author TarekGharsalli opened on Nov 11, 2024
  8

• Building enrichmentmap error message : could not parse line 2 of the enrichment file!

  BaderLab/EnrichmentMapApp#553 · Filter by author freakytam opened on Oct 9, 2024
  3

• concentric circle visualization - ability to visualize multiple EM metrics in the same node

  enhancement
  BaderLab/EnrichmentMapApp#552 · Filter by author risserlin opened on Oct 8, 2024

• Merge Tool to visualise communalities between two networks

  BaderLab/EnrichmentMapApp#551 · Filter by author LilliThePink opened on Sep 17, 2024
  2

• mastermap with commands from docker does not work

  bug
  BaderLab/EnrichmentMapApp#547 · Filter by author risserlin opened on Jul 4, 2024

• issue installing new version of EM app if you installed through EM collection

  BaderLab/EnrichmentMapApp#545 · Filter by author risserlin opened on May 21, 2024
  1

• ability to layout network by dataset

  enhancement
  BaderLab/EnrichmentMapApp#529 · Filter by author risserlin opened on Nov 22, 2023

• Upgrade Java and Guice

  BaderLab/EnrichmentMapApp#525 · Filter by author mikekucera opened on Jul 25, 2023

• Provide a sorted list of pathways

  BaderLab/EnrichmentMapApp#523 · Filter by author mikekucera opened on Jun 28, 2023 · 3.4.0

• "EnrichmentMap - show in pathway commons Functionality" - add input panel so user can control what is used in painter

  enhancement
  BaderLab/EnrichmentMapApp#481 · Filter by author risserlin opened on Feb 17, 2022

• "EnrichmentMap - show in pathway commons Functionality" - overlap metrics not informative

  enhancement
  BaderLab/EnrichmentMapApp#480 · Filter by author risserlin opened on Feb 17, 2022

• "EnrichmentMap - show in pathway commons Functionality" - no expression data needs an error message

  bug
  BaderLab/EnrichmentMapApp#479 · Filter by author risserlin opened on Feb 17, 2022

• EnrichmentMap - show in pathway commons Functionality - Better documentation needed

  enhancement
  BaderLab/EnrichmentMapApp#478 · Filter by author risserlin opened on Feb 17, 2022
  1

• Add notebook demonstrating how to use fgsea with EM

  enhancement
  BaderLab/EnrichmentMapApp#412 · Filter by author risserlin opened on May 11, 2020
  6

• Multi dataset documentation

  docs
  BaderLab/EnrichmentMapApp#410 · Filter by author risserlin opened on May 4, 2020
  

• Change node border color/width in the default one dataset analysis

  bug
  BaderLab/EnrichmentMapApp#344 · Filter by author risserlin opened on Jul 20, 2018
  

• change the way expression file classes are coloured.

  enhancement
  BaderLab/EnrichmentMapApp#247 · Filter by author risserlin opened on Jul 11, 2017

• Set different threshold for different datasets

  enhancement
  BaderLab/EnrichmentMapApp#245 · Filter by author risserlin opened on Jul 7, 2017 · 3.3.5

• Multi dataset analysis - highlight significant values

  enhancement
  BaderLab/EnrichmentMapApp#217 · Filter by author risserlin opened on Jun 16, 2017

• Post analysis node size is disproportionate

  bug
  BaderLab/EnrichmentMapApp#187 · Filter by author risserlin opened on May 9, 2017 · 3.1_release
  3

  

• creating EM from cyrest command using edb and rank file creates EM with the wrong ranks

  bug
  BaderLab/EnrichmentMapApp#178 · Filter by author risserlin opened on Mar 7, 2017 · 3.3.4
  

• Update David support - visual style

  bug
  BaderLab/EnrichmentMapApp#159 · Filter by author risserlin opened on Jul 18, 2016 · 3.3.4