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Copy pathbinary_format.go
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635 lines (583 loc) · 17.8 KB
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package horosvec
import (
"bufio"
"bytes"
"encoding/binary"
"errors"
"fmt"
"io"
"math"
"sort"
)
// Binary format (big-endian). Header 32 bytes:
//
// offset size field
// 0 4 magic "HVEC"
// 4 1 version (0x01 legacy, 0x02 with rotation meta)
// 5 1 flags (bit0 vectors present, bit1 quantized present)
// 6 2 dim (uint16)
// 8 2 max_degree (uint16)
// 10 2 medoid_flag (bit0 = medoid present)
// 12 8 medoid (int64)
// 20 8 num_nodes (int64)
// 28 4 meta_count (uint32)
//
// Per node (in node_id ascending order):
// 8 node_id (int64)
// 2 ext_id_len (uint16)
// N ext_id
// 2 neighbors_count (uint16)
// 8*N neighbors (int64 each)
// 4 quantized_len (uint32)
// N quantized (raw blob, present if flag bit1)
// 4 vector_len (uint32 — number of float32, 0 if absent)
// 4*N vector (float32 each, present if flag bit0 and len>0)
// 4 sq_norm (float32)
// 4 l1_norm (float32)
//
// Per meta entry:
// 2 key_len (uint16)
// N key (UTF-8)
// 4 value_len (uint32)
// N value
var (
binaryMagic = [4]byte{'H', 'V', 'E', 'C'}
binaryVersion = uint8(0x02)
binaryVersionV1 = uint8(0x01)
supportedVersions = map[uint8]struct{}{
binaryVersionV1: {},
binaryVersion: {},
}
)
const (
flagVectorsPresent uint8 = 1 << 0
flagQuantizedPresent uint8 = 1 << 1
flagMedoidPresent uint16 = 1 << 0
)
// maxPreallocBlob bounds a single length-prefixed blob (quantized code, vector,
// meta value) read from an untrusted binary stream; larger claimed lengths are
// rejected before allocation. 64 MiB is far above any legitimate per-node blob.
const maxPreallocBlob = 1 << 26
// maxPreallocNodes bounds eager slice/map capacity hints derived from an
// untrusted node/meta count. The real count still drives the read loop.
const maxPreallocNodes = 1 << 20
// ErrBadMagic indicates the stream does not start with the HVEC magic header.
var ErrBadMagic = errors.New("horosvec: bad binary magic")
// ErrBadVersion indicates an unsupported binary format version.
var ErrBadVersion = errors.New("horosvec: unsupported binary version")
// nodeBinary is an internal carrier between DB rows / RAM cache and the binary writer.
type nodeBinary struct {
nodeID int64
extID []byte
neighbors []int64
quantized []byte
vector []float32
sqNorm float64
l1Norm float64
}
// ExportBinary serializes the index state to w in the HVEC binary format.
// Works for both DB-backed indices and standalone (db == nil) indices.
// Returns the number of bytes written.
func (idx *Index) ExportBinary(w io.Writer) (int64, error) {
idx.mu.RLock()
defer idx.mu.RUnlock()
nodes, meta, err := idx.collectForExport()
if err != nil {
return 0, err
}
// Sort nodes by node_id for deterministic output.
sort.Slice(nodes, func(i, j int) bool { return nodes[i].nodeID < nodes[j].nodeID })
// Buffer everything first then flush once.
buf := bytes.NewBuffer(make([]byte, 0, 64*1024))
bw := bufio.NewWriter(buf)
var flags uint8
flags |= flagVectorsPresent
flags |= flagQuantizedPresent
dim := idx.dim
if dim < 0 || dim > 0xFFFF {
return 0, fmt.Errorf("horosvec: dim %d out of uint16 range", dim)
}
maxDeg := idx.cfg.MaxDegree
if maxDeg < 0 || maxDeg > 0xFFFF {
return 0, fmt.Errorf("horosvec: max_degree %d out of uint16 range", maxDeg)
}
// Header
if _, err := bw.Write(binaryMagic[:]); err != nil {
return 0, err
}
if err := bw.WriteByte(binaryVersion); err != nil {
return 0, err
}
if err := bw.WriteByte(flags); err != nil {
return 0, err
}
if err := binWriteU16(bw, uint16(dim)); err != nil {
return 0, err
}
if err := binWriteU16(bw, uint16(maxDeg)); err != nil {
return 0, err
}
medoidFlag := flagMedoidPresent
if err := binWriteU16(bw, medoidFlag); err != nil {
return 0, err
}
if err := binWriteI64(bw, idx.medoid); err != nil {
return 0, err
}
if err := binWriteI64(bw, int64(len(nodes))); err != nil {
return 0, err
}
if err := binWriteU32(bw, uint32(len(meta))); err != nil {
return 0, err
}
// Nodes
for i := range nodes {
n := &nodes[i]
if err := binWriteI64(bw, n.nodeID); err != nil {
return 0, err
}
if len(n.extID) > 0xFFFF {
return 0, fmt.Errorf("horosvec: ext_id len %d exceeds uint16", len(n.extID))
}
if err := binWriteU16(bw, uint16(len(n.extID))); err != nil {
return 0, err
}
if _, err := bw.Write(n.extID); err != nil {
return 0, err
}
if len(n.neighbors) > 0xFFFF {
return 0, fmt.Errorf("horosvec: neighbors count %d exceeds uint16", len(n.neighbors))
}
if err := binWriteU16(bw, uint16(len(n.neighbors))); err != nil {
return 0, err
}
for _, nb := range n.neighbors {
if err := binWriteI64(bw, nb); err != nil {
return 0, err
}
}
if err := binWriteU32(bw, uint32(len(n.quantized))); err != nil {
return 0, err
}
if len(n.quantized) > 0 {
if _, err := bw.Write(n.quantized); err != nil {
return 0, err
}
}
if err := binWriteU32(bw, uint32(len(n.vector))); err != nil {
return 0, err
}
for _, f := range n.vector {
if err := binWriteF32(bw, f); err != nil {
return 0, err
}
}
if err := binWriteF32(bw, float32(n.sqNorm)); err != nil {
return 0, err
}
if err := binWriteF32(bw, float32(n.l1Norm)); err != nil {
return 0, err
}
}
// Meta entries
for _, m := range meta {
if len(m.key) > 0xFFFF {
return 0, fmt.Errorf("horosvec: meta key len %d exceeds uint16", len(m.key))
}
if err := binWriteU16(bw, uint16(len(m.key))); err != nil {
return 0, err
}
if _, err := bw.WriteString(m.key); err != nil {
return 0, err
}
if err := binWriteU32(bw, uint32(len(m.value))); err != nil {
return 0, err
}
if len(m.value) > 0 {
if _, err := bw.Write(m.value); err != nil {
return 0, err
}
}
}
if err := bw.Flush(); err != nil {
return 0, err
}
n, err := w.Write(buf.Bytes())
return int64(n), err
}
type metaEntry struct {
key string
value []byte
}
// collectForExport gathers node + meta data from either the DB or the in-RAM cache.
// Caller must hold idx.mu (R or W).
func (idx *Index) collectForExport() ([]nodeBinary, []metaEntry, error) {
if idx.db != nil {
return idx.collectFromDB()
}
return idx.collectFromCache()
}
func (idx *Index) collectFromDB() ([]nodeBinary, []metaEntry, error) {
rows, err := idx.db.Query("SELECT node_id, ext_id, neighbors, quantized, vector, sq_norm, l1_norm FROM vindex_nodes ORDER BY node_id")
if err != nil {
return nil, nil, fmt.Errorf("horosvec: export query nodes: %w", err)
}
defer func() { _ = rows.Close() }()
var nodes []nodeBinary
for rows.Next() {
var nb nodeBinary
var extID, neighborsBlob, quantized, vectorBlob []byte
if err := rows.Scan(&nb.nodeID, &extID, &neighborsBlob, &quantized, &vectorBlob, &nb.sqNorm, &nb.l1Norm); err != nil {
return nil, nil, fmt.Errorf("horosvec: export scan node: %w", err)
}
nb.extID = append([]byte(nil), extID...)
nb.neighbors = deserializeInt64s(neighborsBlob)
nb.quantized = append([]byte(nil), quantized...)
nb.vector = deserializeFloat32s(vectorBlob)
nodes = append(nodes, nb)
}
if err := rows.Err(); err != nil {
return nil, nil, fmt.Errorf("horosvec: export iter nodes: %w", err)
}
metaRows, err := idx.db.Query("SELECT key, value FROM vindex_meta")
if err != nil {
return nil, nil, fmt.Errorf("horosvec: export query meta: %w", err)
}
defer func() { _ = metaRows.Close() }()
var meta []metaEntry
for metaRows.Next() {
var m metaEntry
var val []byte
if err := metaRows.Scan(&m.key, &val); err != nil {
return nil, nil, fmt.Errorf("horosvec: export scan meta: %w", err)
}
m.value = append([]byte(nil), val...)
meta = append(meta, m)
}
if err := metaRows.Err(); err != nil {
return nil, nil, fmt.Errorf("horosvec: export iter meta: %w", err)
}
return nodes, meta, nil
}
func (idx *Index) collectFromCache() ([]nodeBinary, []metaEntry, error) {
idx.cache.mu.RLock()
defer idx.cache.mu.RUnlock()
nodes := make([]nodeBinary, 0, len(idx.cache.items))
for id, cn := range idx.cache.items {
nodes = append(nodes, nodeBinary{
nodeID: id,
extID: append([]byte(nil), cn.extID...),
neighbors: append([]int64(nil), cn.neighbors...),
quantized: append([]byte(nil), cn.code...),
vector: append([]float32(nil), cn.vec...),
sqNorm: cn.sqNorm,
l1Norm: cn.l1Norm,
})
}
meta := make([]metaEntry, 0, len(idx.standaloneMeta))
for _, k := range idx.standaloneMetaKeys {
meta = append(meta, metaEntry{key: k, value: append([]byte(nil), idx.standaloneMeta[k]...)})
}
return nodes, meta, nil
}
// ImportBinary deserializes an HVEC binary stream into a standalone Index.
// The returned Index has db == nil and is ready for Search calls. It must not
// be used with Build/Insert (which require a DB).
func ImportBinary(r io.Reader) (*Index, error) {
br := bufio.NewReader(r)
// Header
var magic [4]byte
if _, err := io.ReadFull(br, magic[:]); err != nil {
return nil, fmt.Errorf("horosvec: read magic: %w", err)
}
if magic != binaryMagic {
return nil, ErrBadMagic
}
version, err := br.ReadByte()
if err != nil {
return nil, fmt.Errorf("horosvec: read version: %w", err)
}
if _, ok := supportedVersions[version]; !ok {
return nil, fmt.Errorf("%w: got 0x%02x", ErrBadVersion, version)
}
flags, err := br.ReadByte()
if err != nil {
return nil, fmt.Errorf("horosvec: read flags: %w", err)
}
dim, err := binReadU16(br)
if err != nil {
return nil, fmt.Errorf("horosvec: read dim: %w", err)
}
maxDeg, err := binReadU16(br)
if err != nil {
return nil, fmt.Errorf("horosvec: read max_degree: %w", err)
}
medoidFlag, err := binReadU16(br)
if err != nil {
return nil, fmt.Errorf("horosvec: read medoid_flag: %w", err)
}
medoid, err := binReadI64(br)
if err != nil {
return nil, fmt.Errorf("horosvec: read medoid: %w", err)
}
numNodes, err := binReadI64(br)
if err != nil {
return nil, fmt.Errorf("horosvec: read num_nodes: %w", err)
}
metaCount, err := binReadU32(br)
if err != nil {
return nil, fmt.Errorf("horosvec: read meta_count: %w", err)
}
hasVectors := flags&flagVectorsPresent != 0
hasQuantized := flags&flagQuantizedPresent != 0
hasMedoid := medoidFlag&flagMedoidPresent != 0
// Validate header fields before allocating: the stream may be corrupt or
// hostile. Negative or absurd counts must not reach make() (panic/OOM).
if numNodes < 0 {
return nil, fmt.Errorf("horosvec: import: negative num_nodes %d", numNodes)
}
if dim == 0 && numNodes > 0 {
return nil, fmt.Errorf("horosvec: import: %d nodes with zero dim", numNodes)
}
// Cap eager pre-allocation hints so a tiny corrupt blob claiming a huge
// node count cannot OOM before io.ReadFull fails on the truncated body.
// The read loop still honours the real numNodes; only the initial capacity
// hint is bounded, growth happens as bytes are actually read.
capHint := int(numNodes)
if capHint > maxPreallocNodes {
capHint = maxPreallocNodes
}
cfg := DefaultConfig()
cfg.MaxDegree = int(maxDeg)
if numNodes > int64(cfg.CacheCapacity) {
cfg.CacheCapacity = int(numNodes)
}
metaHint := int(metaCount)
if metaHint > maxPreallocNodes {
metaHint = maxPreallocNodes
}
idx := &Index{
db: nil,
cfg: cfg,
cache: newNodeCache(capHint + 1),
dim: int(dim),
nextID: numNodes,
standaloneMeta: make(map[string][]byte, metaHint),
standaloneMetaKeys: make([]string, 0, metaHint),
}
// Standalone cache must hold every node (no eviction); set logical capacity
// to the true count even though the map hint was bounded above.
idx.cache.capacity = int(numNodes) + 1
if hasMedoid {
idx.medoid = medoid
}
flatVecs := make([]float32, 0, capHint*int(dim))
flatIDs := make([][]byte, 0, capHint)
for i := int64(0); i < numNodes; i++ {
nodeID, err := binReadI64(br)
if err != nil {
return nil, fmt.Errorf("horosvec: read node_id [%d]: %w", i, err)
}
extIDLen, err := binReadU16(br)
if err != nil {
return nil, fmt.Errorf("horosvec: read ext_id_len [%d]: %w", i, err)
}
extID := make([]byte, extIDLen)
if _, err := io.ReadFull(br, extID); err != nil {
return nil, fmt.Errorf("horosvec: read ext_id [%d]: %w", i, err)
}
nbCount, err := binReadU16(br)
if err != nil {
return nil, fmt.Errorf("horosvec: read neighbors_count [%d]: %w", i, err)
}
neighbors := make([]int64, nbCount)
for j := range neighbors {
v, err := binReadI64(br)
if err != nil {
return nil, fmt.Errorf("horosvec: read neighbor [%d,%d]: %w", i, j, err)
}
neighbors[j] = v
}
quantLen, err := binReadU32(br)
if err != nil {
return nil, fmt.Errorf("horosvec: read quantized_len [%d]: %w", i, err)
}
if quantLen > maxPreallocBlob {
return nil, fmt.Errorf("horosvec: quantized_len %d exceeds cap at node %d", quantLen, i)
}
var quantized []byte
if quantLen > 0 {
quantized = make([]byte, quantLen)
if _, err := io.ReadFull(br, quantized); err != nil {
return nil, fmt.Errorf("horosvec: read quantized [%d]: %w", i, err)
}
}
_ = hasQuantized
vecLen, err := binReadU32(br)
if err != nil {
return nil, fmt.Errorf("horosvec: read vector_len [%d]: %w", i, err)
}
if vecLen > maxPreallocBlob {
return nil, fmt.Errorf("horosvec: vector_len %d exceeds cap at node %d", vecLen, i)
}
var vec []float32
if vecLen > 0 {
vec = make([]float32, vecLen)
for j := range vec {
f, err := binReadF32(br)
if err != nil {
return nil, fmt.Errorf("horosvec: read vec elem [%d,%d]: %w", i, j, err)
}
vec[j] = f
}
}
_ = hasVectors
sqNorm, err := binReadF32(br)
if err != nil {
return nil, fmt.Errorf("horosvec: read sq_norm [%d]: %w", i, err)
}
l1Norm, err := binReadF32(br)
if err != nil {
return nil, fmt.Errorf("horosvec: read l1_norm [%d]: %w", i, err)
}
idx.cache.put(&cachedNode{
nodeID: nodeID,
extID: extID,
neighbors: neighbors,
vec: vec,
code: quantized,
sqNorm: float64(sqNorm),
l1Norm: float64(l1Norm),
})
if len(vec) == int(dim) {
flatVecs = append(flatVecs, vec...)
flatIDs = append(flatIDs, extID)
}
}
for i := uint32(0); i < metaCount; i++ {
keyLen, err := binReadU16(br)
if err != nil {
return nil, fmt.Errorf("horosvec: read meta key_len [%d]: %w", i, err)
}
keyBuf := make([]byte, keyLen)
if _, err := io.ReadFull(br, keyBuf); err != nil {
return nil, fmt.Errorf("horosvec: read meta key [%d]: %w", i, err)
}
valLen, err := binReadU32(br)
if err != nil {
return nil, fmt.Errorf("horosvec: read meta value_len [%d]: %w", i, err)
}
if valLen > maxPreallocBlob {
return nil, fmt.Errorf("horosvec: meta value_len %d exceeds cap at entry %d", valLen, i)
}
val := make([]byte, valLen)
if valLen > 0 {
if _, err := io.ReadFull(br, val); err != nil {
return nil, fmt.Errorf("horosvec: read meta value [%d]: %w", i, err)
}
}
key := string(keyBuf)
idx.standaloneMeta[key] = val
idx.standaloneMetaKeys = append(idx.standaloneMetaKeys, key)
}
// Rotation meta: v1 exports omit keys → identity rotation, codeDim=dim.
rotRounds := 0
rotSeed := uint64(0)
codeDim := int(dim)
if version >= binaryVersion {
if b, ok := idx.standaloneMeta["rotation_rounds"]; ok {
rotRounds = int(deserializeInt64(b))
}
if b, ok := idx.standaloneMeta["rotation_seed"]; ok {
rotSeed = uint64(deserializeInt64(b))
}
if b, ok := idx.standaloneMeta["code_dim"]; ok {
codeDim = int(deserializeInt64(b))
}
}
if err := validateRotationMeta(int(dim), codeDim, rotRounds); err != nil {
return nil, err
}
idx.codeDim = codeDim
idx.rotator = NewRotatorWithCodeDim(int(dim), codeDim, rotRounds, rotSeed)
// Centroid lives in rotated/padded space; length must match codeDim.
centroid := make([]float32, codeDim)
if cb, ok := idx.standaloneMeta["centroid"]; ok {
if len(cb) != codeDim*4 {
return nil, fmt.Errorf("horosvec: centroid length %d != code_dim*4 (%d)", len(cb), codeDim*4)
}
centroid = deserializeFloat32s(cb)
}
idx.encoder = NewEncoder(centroid)
idx.centroid = NewCentroidTracker(int(dim), cfg.DriftThreshold, cfg.InsertRatioThreshold)
idx.centroid.SetCentroid(centroid, numNodes)
idx.centroid.SetBuildCentroid(centroid, numNodes)
if numNodes > 0 {
idx.built = true
}
// Populate flat vectors for brute-force path. Always set in standalone mode
// so bruteForceSearch doesn't fall into the SQLite branch.
if len(flatVecs) == int(numNodes)*int(dim) {
idx.flatVecs = flatVecs
idx.flatIDs = flatIDs
}
if numNodes > 0 {
if err := idx.rebuildPlaneLocked(); err != nil {
return nil, fmt.Errorf("horosvec: build hot plane on import: %w", err)
}
}
return idx, nil
}
// --- big-endian helpers ---
func binWriteU16(w io.ByteWriter, v uint16) error {
if err := w.WriteByte(byte(v >> 8)); err != nil {
return err
}
return w.WriteByte(byte(v))
}
func binWriteU32(w io.Writer, v uint32) error {
var b [4]byte
binary.BigEndian.PutUint32(b[:], v)
_, err := w.Write(b[:])
return err
}
func binWriteI64(w io.Writer, v int64) error {
var b [8]byte
binary.BigEndian.PutUint64(b[:], uint64(v))
_, err := w.Write(b[:])
return err
}
func binWriteF32(w io.Writer, v float32) error {
var b [4]byte
binary.BigEndian.PutUint32(b[:], math.Float32bits(v))
_, err := w.Write(b[:])
return err
}
func binReadU16(r io.Reader) (uint16, error) {
var b [2]byte
if _, err := io.ReadFull(r, b[:]); err != nil {
return 0, err
}
return binary.BigEndian.Uint16(b[:]), nil
}
func binReadU32(r io.Reader) (uint32, error) {
var b [4]byte
if _, err := io.ReadFull(r, b[:]); err != nil {
return 0, err
}
return binary.BigEndian.Uint32(b[:]), nil
}
func binReadI64(r io.Reader) (int64, error) {
var b [8]byte
if _, err := io.ReadFull(r, b[:]); err != nil {
return 0, err
}
return int64(binary.BigEndian.Uint64(b[:])), nil
}
func binReadF32(r io.Reader) (float32, error) {
var b [4]byte
if _, err := io.ReadFull(r, b[:]); err != nil {
return 0, err
}
return math.Float32frombits(binary.BigEndian.Uint32(b[:])), nil
}