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@BilkentCompGen

Alkan Lab for Bioinformatics and Computational Genomics

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  1. tardis tardis Public

    Toolkit for automated and rapid discovery of structural variants

    C 24 7

  2. GateKeeper GateKeeper Public

    GateKeeper: Fast Alignment Filter for DNA Short Read Mapping

    VHDL 23 9

  3. hercules hercules Public

    Profile HMM-based hybrid error correction algorithm for long reads

    C++ 21 4

  4. mrfast mrfast Public

    micro-read Fast Alignment Search Tool

    C 20 4

  5. valor valor Public

    variation discovery using long range information in linked-reads

    C 15 2

  6. mrcanavar mrcanavar Public

    micro-read Copy Number Variant Regions finder

    C 10 2

Repositories

Showing 10 of 30 repositories
  • BilkentCompGen.github.io Public

    Alkan Lab website

    BilkentCompGen/BilkentCompGen.github.io's past year of commit activity
    SCSS 2 8 0 0 Updated Sep 28, 2026
  • bioinformatics-algorithms Public

    CS481/583 Course Web Page

    BilkentCompGen/bioinformatics-algorithms's past year of commit activity
    CSS 2 BSD-2-Clause 0 0 0 Updated Sep 26, 2026
  • rica_s Public

    A container-base, modular workflow for rapid pathogen identification and antimicrobial‑resistance (AMR) profiling from long‑read sequencing data, geared toward sepsis diagnostics.

    BilkentCompGen/rica_s's past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Sep 24, 2026
  • lcptools Public

    Implementation of LCP in C

    BilkentCompGen/lcptools's past year of commit activity
    C++ 3 BSD-3-Clause 3 0 0 Updated Sep 22, 2026
  • FUSOR Public
    BilkentCompGen/FUSOR's past year of commit activity
    C++ 0 BSD-3-Clause 0 0 0 Updated Sep 8, 2026
  • KoNuSeg Public
    BilkentCompGen/KoNuSeg's past year of commit activity
    C++ 0 BSD-3-Clause 0 0 0 Updated Aug 31, 2026
  • corallel Public

    Corallel utilizes the innovative Locally Consistent Parsing (LCP) algorithm for precise genomic comparisons, supporting .fastq and .fasta files. Implemented in C for high performance on large datasets

    BilkentCompGen/corallel's past year of commit activity
    C 1 BSD-3-Clause 0 0 0 Updated Aug 17, 2026
  • faves Public
    BilkentCompGen/faves's past year of commit activity
    C 0 BSD-3-Clause 0 0 0 Updated Aug 7, 2026
  • repeatnet Public

    RepeatNet: an ab initio centromeric sequence detection algorithm

    BilkentCompGen/repeatnet's past year of commit activity
    C 1 BSD-3-Clause 0 0 0 Updated Jul 9, 2026
  • saber Public

    Pattern matching tool to detect block rearrangement events in genomic sequences

    BilkentCompGen/saber's past year of commit activity
    C++ 2 0 0 0 Updated Jun 24, 2026

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