All pull requests

Pull requests

• Optimize inner sigmas on log scale in NumericalInnerSolver

  #1788·FFroehlich opened Oct 10, 2026Contributor·

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• Plot observable mappings of offset-only relative observables

  #1787·FFroehlich opened Oct 10, 2026Contributor·

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  2

• Support constant unscaled terms in hierarchical observable formulas

  #1786·FFroehlich opened Oct 10, 2026Contributor·

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• CI: rotate tox cache weekly and key it on deps and exact Python version

  #1784·PaulJonasJost opened Oct 8, 2026Collaborator·4 tasks·

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• Make compiled AMICI model folder unique per model

  #1783·FFroehlich opened Oct 7, 2026Contributor·

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  8

• Support parameter scales for PEtab v2 problems

  #1782·FFroehlich opened Oct 7, 2026Contributor·

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• Hierarchical: honour noise models of data without inner parameters

  #1778·FFroehlich opened Oct 6, 2026Contributor·

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  12

• Support multi-model PEtab v2 problems via AggregatedObjective

  #1772·FFroehlich opened Oct 2, 2026Contributor·

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  10

• Add startpoints arg to minimize(); deprecate Problem.x_guesses

  #1763·dweindl opened Sep 25, 2026Member·

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• GHA: Split the base tox/CI env by dependency footprint

  #1761·dweindl opened Sep 24, 2026Member·

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• Time specific noise value overrides

  #1731·PaulJonasJost opened Jul 14, 2026Collaborator·

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• Migration to juliacall

  #1721·PaulJonasJost opened Jun 5, 2026Collaborator·

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• Viz 02: Harmonise 1D distribution plots (histogram + KDE)

  #1718·Doresic opened May 28, 2026Contributor·

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• Profile method 1 stabilisation and default

  #1713·Doresic opened May 8, 2026Contributor·

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• Profile: add multistart optimization for profile points

  #1712·Doresic opened May 7, 2026Contributor·

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• Failing Tests Track

  #1665·PaulJonasJost opened Dec 18, 2025Collaborator·

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• Unified Interface: Absolute Tolerance

  #1660·PaulJonasJost opened Dec 15, 2025Collaborator·

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• Select: postprocessor to save models to YAML intermediately

  #1647·dilpath opened Nov 28, 2025Member·

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• Adding Metropolis-Adjusted Langevin Algorithm

  enhancementsampling
  #1617·arrjon opened Sep 30, 2025Member·

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• Parameter ensemble plot

  #1574·plakrisenko opened May 6, 2025Member·

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• Add examples to pypesto module

  #1561·PaulJonasJost opened Mar 13, 2025Collaborator·

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• Fix Attempt #1463

  #1464·FFroehlich opened Sep 16, 2024Contributor·

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• Update julia objective

  #1398·m-philipps opened May 7, 2024Contributor·

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  3