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Kainmueller Lab

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  1. PatchPerPix PatchPerPix Public

    official implementation of the PatchPerPix instance segmentation method

    Python 36 7

  2. arctique arctique Public

    Python 11 2

  3. Pathology-Foundation-Model-Benchmark Pathology-Foundation-Model-Benchmark Public

    Benchmarking the ability of pathology foundation models to do cell type classification

    Python 10 2

  4. PatchPerPix_experiments PatchPerPix_experiments Public archive

    experiments script for the PatchPerPix instance segmentation method

    Python 8 3

  5. evaluate-instance-segmentation evaluate-instance-segmentation Public

    Evaluation scripts for nuclei instance segmentation in 2d and 3d

    Python 7 2

  6. shift_equivariance_unet shift_equivariance_unet Public

    How Shift Equivariance Impacts Metric Learning for Instance Segmentation

    Jupyter Notebook 5 2

Repositories

Showing 10 of 42 repositories
  • Bio-Image-Datasets Public

    Contains dataloaders for popular bio-medical image datasets.

    Kainmueller-Lab/Bio-Image-Datasets's past year of commit activity
    Python 1 MIT 0 2 1 Updated Sep 3, 2026
  • Kainmueller-Lab/review_vit_xai's past year of commit activity
    HTML 0 MIT 1 0 0 Updated Sep 2, 2026
  • arctique Public
    Kainmueller-Lab/arctique's past year of commit activity
    Python 11 GPL-3.0 2 0 1 Updated Aug 30, 2026
  • aqqua Public
    Kainmueller-Lab/aqqua's past year of commit activity
    JavaScript 1 0 0 0 Updated Aug 27, 2026
  • aggrigator Public
    Kainmueller-Lab/aggrigator's past year of commit activity
    Jupyter Notebook 5 MIT 2 1 0 Updated Aug 25, 2026
  • Pathology-Foundation-Model-Benchmark Public

    Benchmarking the ability of pathology foundation models to do cell type classification

    Kainmueller-Lab/Pathology-Foundation-Model-Benchmark's past year of commit activity
    Python 10 MIT 2 0 0 Updated Aug 25, 2026
  • Evaluate-Graph-Metrics Public

    Evaluate the similarity between two graphs, e.g. ground truth vs predicted skeletons of blood vessel segmentation.

    Kainmueller-Lab/Evaluate-Graph-Metrics's past year of commit activity
    Python 0 0 0 0 Updated Aug 14, 2026
  • Vesselpose Public

    Vessel Graph Reconstruction from Learned Voxel-wise Direction Vectors in 3D Vascular Images

    Kainmueller-Lab/Vesselpose's past year of commit activity
    Python 5 MIT 0 1 0 Updated Aug 6, 2026
  • ssl-rep-seg Public

    Repo for Unsupervised Semantic Segmentation Facilitates Model Understanding

    Kainmueller-Lab/ssl-rep-seg's past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Jun 29, 2026
  • fisbe Public
    Kainmueller-Lab/fisbe's past year of commit activity
    SCSS 0 0 0 0 Updated Apr 8, 2026

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