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Error converting GenBank files with spaces in feature types #607

Description

@cjmyers

The following exception on the attached file below occurs when converting a GenBank file with spaces in the feature type field.

Error: java.lang.NumberFormatException: For input string: "sequence"
at java.lang.NumberFormatException.forInputString(NumberFormatException.java:65)
at java.lang.Integer.parseInt(Integer.java:580)
at java.lang.Integer.parseInt(Integer.java:615)
at org.sbolstandard.core2.GenBank.read(GenBank.java:1457)
at org.sbolstandard.core2.SBOLReader.read(SBOLReader.java:700)
at org.sbolstandard.core2.SBOLReader.read(SBOLReader.java:625)
at org.sbolstandard.core2.SBOLReader.read(SBOLReader.java:512)
at org.sbolstandard.core2.SBOLReader.read(SBOLReader.java:437)
at org.sbolstandard.core2.SBOLReader.read(SBOLReader.java:422)
at org.sbolstandard.core2.SBOLValidate.validate(SBOLValidate.java:2725)
at org.sbolstandard.core2.SBOLValidate.validate(SBOLValidate.java:2656)

laci.zip

Activity

  1. self-assigned this
    on Dec 9, 2019
  2. added this to the SBOL 2.5 milestone on Dec 9, 2019
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