Issues

• Remove anaconda channel

  TRON-Bioinformatics/seq2HLA#19 · Filter by author jonasfreimuth opened on Jul 28, 2025

• v2.4 failed run

  TRON-Bioinformatics/seq2HLA#17 · Filter by author Kaddea opened on Feb 9, 2024

• allele 1 is missing in the run2-ClassI-class.HLAgenotype4digits

  TRON-Bioinformatics/seq2HLA#16 · Filter by author Jill-Yien opened on Nov 16, 2023

• version 2.3 error

  TRON-Bioinformatics/seq2HLA#15 · Filter by author gengbaobao opened on Oct 23, 2023
  1

• Can I use the bowtie index file in the subdirectory 'reference'

  TRON-Bioinformatics/seq2HLA#13 · Filter by author JingAnyaSun opened on Jun 2, 2023

• Create a Release for version 2.3

  TRON-Bioinformatics/seq2HLA#12 · Filter by author jj-umn opened on Feb 16, 2023
  1

• Low number of paired-end alignments

  TRON-Bioinformatics/seq2HLA#11 · Filter by author vgarciavc opened on Dec 9, 2022

• Confidence score and p-value

  TRON-Bioinformatics/seq2HLA#10 · Filter by author yuanfeng719 opened on Sep 15, 2022
  1

• My fastq file of RNA-seq can not be used to estimate HLA classification

  TRON-Bioinformatics/seq2HLA#9 · Filter by author lzz-123 opened on Jun 7, 2022

• Typing of MICA/MICB

  TRON-Bioinformatics/seq2HLA#8 · Filter by author prmac opened on Jun 16, 2021

• Homozygous prediction for all samples

  TRON-Bioinformatics/seq2HLA#7 · Filter by author yuanfeng719 opened on May 5, 2021

• allele-specific HLA expression

  TRON-Bioinformatics/seq2HLA#6 · Filter by author cjieming2 opened on Mar 2, 2021

• Can I use seq2HLA for cancer scRNA-seq data?

  TRON-Bioinformatics/seq2HLA#5 · Filter by author levinhein opened on Oct 15, 2020
  1

• FPKM instead of RPKM for paired-end data

  TRON-Bioinformatics/seq2HLA#3 · Filter by author marcopretti opened on Feb 4, 2020
  2

• Error while running seq2HLA

  TRON-Bioinformatics/seq2HLA#1 · Filter by author ChiragNepal opened on Jun 13, 2019
  2