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@YuLab-SMU

Bioinformatics Group @ SMU

Research group led by Prof. Guangchuang Yu in School of Basic Medical Sciences, Southern Medical University

้•ฟๆœŸๆ‹›่˜ๅšๅฃซๅŽ๏ผŒๆฌข่ฟŽๅ’จ่ฏขใ€‚


The research group has developed a variety of widely recognized bioinformatics tools in the fields of biomedical knowledge mining and knowledge discovery (e.g., clusterProfiler, GOSemSim, DOSE), phylogenetic data integration and visualization (e.g., treeio, ggtree, ggtreeExtra), metagenomic data analysis (e.g., MicrobiotaProcess) and data visualization (e.g., ggbreak, aplot, enrichplot, ChIPseeker), etc., to help biologists explore and understand data.

Links

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  1. clusterProfiler clusterProfiler Public

    ๐Ÿ“Š A universal enrichment tool for interpreting omics data

    R 1.2k 267

  2. ggtree ggtree Public

    ๐ŸŽ„Visualization and annotation of phylogenetic trees

    R 935 183

  3. aisdk aisdk Public

    ๐Ÿค– A production-grade framework for building AI-powered applications in R.

    R 76 8

  4. Rho Rho Public

    an agent-native desktop workbench for R

    TypeScript 33 10

  5. SVP SVP Public

    Spatially Variable Profiler

    R 12

  6. sclet sclet Public

    A State-Aware Single-Cell and Spatial Transcriptomics Toolkit for SingleCellExperiment

    R 24 8

Repositories

Showing 10 of 143 repositories
  • ggcircos Public
    YuLab-SMU/ggcircos's past year of commit activity
    R 3 GPL-3.0 1 1 0 Updated Oct 21, 2026
  • ggmsa Public

    ๐Ÿšฅ Visualizing publication-quality multiple sequence alignment using ggplot2

    YuLab-SMU/ggmsa's past year of commit activity
    R 220 29 45 0 Updated Oct 21, 2026
  • sclet Public

    A State-Aware Single-Cell and Spatial Transcriptomics Toolkit for SingleCellExperiment

    YuLab-SMU/sclet's past year of commit activity
    R 24 8 0 0 Updated Oct 21, 2026
  • excercise Public
    YuLab-SMU/excercise's past year of commit activity
    HTML 0 1 0 0 Updated Oct 21, 2026
  • ygc-blog Public

    Guangchuang Yu's Blog

    YuLab-SMU/ygc-blog's past year of commit activity
    TypeScript 0 MIT 0 0 0 Updated Oct 20, 2026
  • Rho-plugins Public

    Official scientific plugins and native runtime implementations for Rho

    YuLab-SMU/Rho-plugins's past year of commit activity
    TypeScript 0 AGPL-3.0 0 0 0 Updated Oct 19, 2026
  • Rho Public

    an agent-native desktop workbench for R

    YuLab-SMU/Rho's past year of commit activity
    TypeScript 33 AGPL-3.0 10 15 2 Updated Oct 19, 2026
  • plotbb Public

    ๐Ÿ–Œ๏ธ Grammar of Graphics on โ€˜baseโ€™ Graphics

    YuLab-SMU/plotbb's past year of commit activity
    R 52 7 0 0 Updated Oct 18, 2026
  • clusterProfiler Public

    ๐Ÿ“Š A universal enrichment tool for interpreting omics data

    YuLab-SMU/clusterProfiler's past year of commit activity
    R 1,243 267 251 0 Updated Oct 18, 2026
  • biomedical-knowledge-mining-book Public

    ๐Ÿ“– Biomedical knowledge mining using GOSemSim and clusterProfiler

    YuLab-SMU/biomedical-knowledge-mining-book's past year of commit activity
    R 96 30 0 0 Updated Oct 18, 2026