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Treat transcripts with undefined GTF strand ('.') as '+' in Aligned.toTranscriptome.out.bam and count them from both strands in STARsolo
#2708cindykrafft opened Sep 24, 2026
Advance countMatMult stride once per gene, not once per dedup option (fixes #2704)
#2705danielsharritt opened Sep 8, 2026
fix C++ compatibility issues with operator>> on char*
#2703satta opened Aug 19, 2026Contributor
Align in-memory splice-junction records
#2699justinblethrow-cloud opened Jul 15, 2026
Initialize optional transcriptome state
#2698justinblethrow-cloud opened Jul 15, 2026
Avoid unaligned packed index accesses
#2697justinblethrow-cloud opened Jul 15, 2026
Bound inserted-sequence suffix comparisons
#2696justinblethrow-cloud opened Jul 15, 2026
feat: native ARM64 / Apple Silicon and macOS clang build support
#2694BenjaminDEMAILLE opened Jun 26, 2026
1
fix(macOS): spawn readFilesCommand via shell (posix_spawnp) so gzipped input works
#2693BenjaminDEMAILLE opened Jun 26, 2026
fix(build): avoid parallel-make (-j) race on generated parametersDefault.xxd
#2692BenjaminDEMAILLE opened Jun 26, 2026
Improve genomeGenerate multicore index build performance
#2687justinblethrow-cloud opened May 20, 2026
2
Add persistent genome insertion with delta overlay mode
#2686justinblethrow-cloud opened May 17, 2026
2
Replace limitGenomeGenerateRAM parameter by required memory
#2680entzian opened Apr 14, 2026
Fix sjA/sjFilter/sjChunks memory leaks
#2676lkeegan opened Mar 4, 2026
Add native CRAM output support (unsorted and coordinate-sorted) via HTSlib
#2670BenjaminDEMAILLE opened Oct 27, 2025
Adding usegalaxy.org and usegalaxy.eu badges
#2666nekrut opened Oct 14, 2025
Bugfix: Resolve race condition with FIFO cleanup and child process termination
#2636robsyme opened Jun 4, 2025
2
Allow vW:i tag for wasp in SAM output
#2617ASLeonard opened Apr 11, 2025
Silicon chip
#2605senku-kz opened Mar 2, 2025
1
remove extraenous OOB write
#2163eternal-flame-AD opened Jun 28, 2024
When soloOutFormatFeaturesGeneField3 is +, write GeneBiotype as FeaturesGeneField3.
#2071galaxy001 opened Feb 24, 2024
Typo in manual? (genomeTransformVCF)
#2029TomHarrop opened Jan 2, 2024 2.7.12
Support SAM vector tags
#2011ohad-rodeh opened Nov 29, 2023 2.7.12
fix small typos in STARmanual.tex
#1926kew24 opened Aug 16, 2023
fix: build under aarch64
#1863starsareintherose opened May 22, 2023

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Treat transcripts with undefined GTF strand ('.') as '+' in Aligned.toTranscriptome.out.bam and count them from both strands in STARsolo

Advance countMatMult stride once per gene, not once per dedup option (fixes #2704)

fix C++ compatibility issues with operator>> on char*

Align in-memory splice-junction records

Initialize optional transcriptome state

Avoid unaligned packed index accesses

Bound inserted-sequence suffix comparisons

feat: native ARM64 / Apple Silicon and macOS clang build support

fix(macOS): spawn readFilesCommand via shell (posix_spawnp) so gzipped input works

fix(build): avoid parallel-make (-j) race on generated parametersDefault.xxd

Improve genomeGenerate multicore index build performance

Add persistent genome insertion with delta overlay mode

Replace limitGenomeGenerateRAM parameter by required memory

Fix `sjA`/`sjFilter`/`sjChunks` memory leaks

Add native CRAM output support (unsorted and coordinate-sorted) via HTSlib

Adding usegalaxy.org and usegalaxy.eu badges

Bugfix: Resolve race condition with FIFO cleanup and child process termination

Allow `vW:i` tag for wasp in SAM output

Silicon chip

remove extraenous OOB write

When `soloOutFormatFeaturesGeneField3` is `+`, write GeneBiotype as FeaturesGeneField3.

Typo in manual? (genomeTransformVCF)

Support SAM vector tags

fix small typos in STARmanual.tex

fix: build under aarch64

Pull requests