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23 changes: 22 additions & 1 deletion docs/source/python/numpy.rst
Original file line number Diff line number Diff line change
Expand Up @@ -51,7 +51,28 @@ factory function.
]

Converting from NumPy supports a wide range of input dtypes, including
structured dtypes or strings.
structured dtypes and both fixed-width (``S`` and ``U``) and variable-width
(:class:`numpy.dtypes.StringDType`) strings.

A ``StringDType`` array converts to :func:`~pyarrow.string` unless
:func:`~pyarrow.large_string` or :func:`~pyarrow.string_view` is requested with
``type``. Missing entries become nulls:

.. code-block:: python

>>> dtype = np.dtypes.StringDType(na_object=np.nan)
>>> arr = pa.array(np.array(["some", np.nan, "strings"], dtype=dtype))
>>> arr
<pyarrow.lib.StringArray object at ...>
[
"some",
null,
"strings"
]

When the ``na_object`` is a string, NumPy treats missing entries as that string
in every operation, and so does the conversion. Pass ``mask`` to mark values as
null explicitly.

Arrow to NumPy
--------------
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1 change: 1 addition & 0 deletions python/pyarrow/src/arrow/python/numpy_convert.cc
Original file line number Diff line number Diff line change
Expand Up @@ -151,6 +151,7 @@ Result<std::shared_ptr<DataType>> NumPyDtypeToArrow(PyArray_Descr* descr) {
TO_ARROW_TYPE_CASE(FLOAT64, float64);
TO_ARROW_TYPE_CASE(STRING, binary);
TO_ARROW_TYPE_CASE(UNICODE, utf8);
TO_ARROW_TYPE_CASE(VSTRING, utf8);
case NPY_DATETIME: {
auto date_dtype =
reinterpret_cast<PyArray_DatetimeDTypeMetaData*>(PyDataType_C_METADATA(descr));
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66 changes: 66 additions & 0 deletions python/pyarrow/src/arrow/python/numpy_to_arrow.cc
Original file line number Diff line number Diff line change
Expand Up @@ -27,6 +27,7 @@
#include <limits>
#include <memory>
#include <string>
#include <string_view>
#include <utility>
#include <vector>

Expand Down Expand Up @@ -295,6 +296,9 @@ class NumPyConverter {
template <typename T>
Status VisitString(T* builder);

template <typename T>
Status VisitStringDType(T* builder);

Status TypeNotImplemented(std::string type_name) {
return Status::NotImplemented("NumPyConverter doesn't implement <", type_name,
"> conversion. ");
Expand Down Expand Up @@ -342,6 +346,11 @@ Status NumPyConverter::Convert() {
return Status::Invalid("Must pass data type for non-object arrays");
}

if (dtype_->type_num == NPY_VSTRING && !is_string_or_string_view(type_->id())) {
return Status::TypeError("Expected an Arrow string type for NumPy StringDType, got ",
type_->ToString());
Comment on lines +349 to +351

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Is this needed? (we don't seem to have it here for other types)

If you leave it out, we get a less good error message? (which feels as something to improve in general, so fine to leave this here as is, and consider cleaning this up / generalizing this as another issue)

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Opened #51678 to keep track of this in general

}

// Visit the type to perform conversion
return VisitTypeInline(*type_, this);
}
Expand Down Expand Up @@ -697,8 +706,65 @@ Status AppendUTF32(const char* data, int64_t itemsize, int byteorder, T* builder

} // namespace

namespace {

std::string_view ToStringView(const npy_static_string& value) {
return value.buf == nullptr ? std::string_view()
: std::string_view(value.buf, value.size);
}

} // namespace

template <typename T>
Status NumPyConverter::VisitStringDType(T* builder) {
auto* descr = reinterpret_cast<PyArray_StringDTypeObject*>(dtype_);
// Use the na_object itself when na_object is a string
const bool null_is_missing = descr->na_object != nullptr && !descr->has_string_na;
const std::string_view null_string = ToStringView(descr->default_string);

const char* data = PyArray_BYTES(arr_);
Ndarray1DIndexer<uint8_t> mask_values;
if (mask_ != nullptr) {
mask_values = Ndarray1DIndexer<uint8_t>(mask_);
}

// Acquiring the allocator lock, so do not acquire the GIL or lock other
// mutexes below or risk deadlocks
auto* allocator = NpyString_acquire_allocator(descr);
std::unique_ptr<npy_string_allocator, decltype(&NpyString_release_allocator)>
allocator_guard(allocator, &NpyString_release_allocator);

npy_static_string value = {0, nullptr};
for (int64_t i = 0; i < length_; ++i, data += stride_) {
if (mask_ != nullptr && mask_values[i]) {
RETURN_NOT_OK(builder->AppendNull());
continue;
}
const auto* packed = reinterpret_cast<const npy_packed_static_string*>(data);
const int is_null = NpyString_load(allocator, packed, &value);
if (is_null == -1) {
return Status::Invalid("Failed to load NumPy StringDType value");
}
if (is_null) {
if (null_is_missing) {
RETURN_NOT_OK(builder->AppendNull());
} else {
RETURN_NOT_OK(builder->Append(null_string));
}
continue;
}
RETURN_NOT_OK(builder->Append(ToStringView(value)));
}
return Status::OK();
}

template <typename T>
Status NumPyConverter::VisitString(T* builder) {
if (dtype_->type_num == NPY_VSTRING) {
// Acquires a lock, so must stay ahead of the gil_lock below
return VisitStringDType(builder);
}

auto data = reinterpret_cast<const uint8_t*>(PyArray_DATA(arr_));

char numpy_byteorder = dtype_->byteorder;
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79 changes: 79 additions & 0 deletions python/pyarrow/tests/test_array.py
Original file line number Diff line number Diff line change
Expand Up @@ -2983,6 +2983,85 @@ def test_array_from_numpy_unicode(string_type):
assert arrow_arr.equals(expected)


@pytest.fixture
def numpy_string_dtype():
dtypes = pytest.importorskip("numpy.dtypes")
return dtypes.StringDType


@pytest.mark.numpy
@pytest.mark.parametrize('string_type', [
None,
pa.string(),
pa.large_string(),
pa.string_view()])
def test_array_from_numpy_string_dtype(numpy_string_dtype, string_type):
values = [
"short",
"a" * 100,
"b" * 300,
"árvíztűrő tükörfúrógép 🥐 你好",
"🥐" * 200,
"",
]
arr = np.array(values, dtype=numpy_string_dtype())

arrow_arr = pa.array(arr, type=string_type)

arrow_arr.validate(full=True)
assert arrow_arr.type == (string_type or pa.string())
assert arrow_arr.to_pylist() == arr.tolist()

strided = np.array(list(itertools.chain.from_iterable(
zip(values, itertools.repeat("skip")))),
dtype=numpy_string_dtype())[::2]
arrow_arr = pa.array(strided, type=string_type)
arrow_arr.validate(full=True)
assert arrow_arr.to_pylist() == values


@pytest.mark.numpy
@pytest.mark.parametrize('na_object, expected', [
(None, None),
(float("nan"), None),
("__placeholder__", "__placeholder__"),
])
def test_array_from_numpy_string_dtype_na_object(
numpy_string_dtype, na_object, expected):
arr = np.array(["some", na_object, "strings"],
dtype=numpy_string_dtype(na_object=na_object))

arrow_arr = pa.array(arr)
arrow_arr.validate(full=True)
assert arrow_arr.to_pylist() == ["some", expected, "strings"]

mask = np.array([False, False, True])
arrow_arr = pa.array(arr, mask=mask)
arrow_arr.validate(full=True)
assert arrow_arr.to_pylist() == ["some", expected, None]


@pytest.mark.numpy
def test_array_from_numpy_string_dtype_rejects_non_string_type(
numpy_string_dtype):
arr = np.array(["some", "strings"], dtype=numpy_string_dtype())

msg = "Expected an Arrow string type.*got binary"
with pytest.raises(TypeError, match=msg):
pa.array(arr, type=pa.binary())


@pytest.mark.numpy
def test_array_from_list_of_numpy_string_dtype_arrays(numpy_string_dtype):
values = [["a", "bb"], ["ccc"]]
arrays = [np.array(v, dtype=numpy_string_dtype()) for v in values]

result = pa.array(arrays)

assert result.type == pa.list_(pa.string())
assert result.to_pylist() == values


@pytest.mark.numpy
def test_array_string_from_non_string():
# ARROW-5682 - when converting to string raise on non string-like dtype
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1 change: 1 addition & 0 deletions python/pyarrow/tests/test_schema.py
Original file line number Diff line number Diff line change
Expand Up @@ -209,6 +209,7 @@ def test_from_numpy_dtype():
(np.dtype('timedelta64[ms]'), pa.duration('ms')),
(np.dtype('timedelta64[us]'), pa.duration('us')),
(np.dtype('timedelta64[ns]'), pa.duration('ns')),
(np.dtypes.StringDType(), pa.string()),
]

for dt, pt in cases:
Expand Down
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