Release 0.6.0: prebuilt simulator images (+ deploy config)

compose_api/api/spec/openapi_3_1_0_generated.yaml

@@ -1,7 +1,7 @@
 openapi: 3.1.0
 info:
   title: compose-api
-  version: 0.5.0
+  version: 0.6.0
 paths:
   /curated/copasi:
     post:
@@ -96,6 +96,11 @@ paths:
       tags:
       - Simulation
       summary: Run a simulation
+      description: '`simulator` names an owner-published image this deployment lists
+        (settings.prebuilt_simulators);
+
+        the job then runs in that image instead of the shared container. Omitted:
+        the shared container.'
       operationId: run-simulation
       parameters:
       - name: interval_time
@@ -112,6 +117,14 @@ paths:
           type: boolean
           default: false
           title: Batch Submission
+      - name: simulator
+        in: query
+        required: false
+        schema:
+          anyOf:
+          - type: string
+          - type: 'null'
+          title: Simulator
       requestBody:
         required: true
         content:

compose_api/version.py

@@ -1 +1 @@
-__version__ = "0.5.0"
+__version__ = "0.6.0"

kustomize/config/compose-api-rke/api.env

@@ -1 +1,4 @@
 INTERNAL_MOUNT_DIR=/projects/CRBM/compose_api
+# Prebuilt simulator images by name (compose_api/simulation/prebuilt.py): `POST /simulation/run?simulator=<name>`
+# runs in that image. Pinned by digest: the cached SIF is keyed on the reference.
+PREBUILT_SIMULATORS={"viva-pde-particle": "ghcr.io/vivarium-collective/viva-pde-particle-compose@sha256:f3ddef47c80f0ffebdc8807788570ec7a7b474b2aaa0a59fc7cfd4573dd595b6"}

kustomize/overlays/compose-api-local-db-migration/kustomization.yaml

@@ -5,7 +5,7 @@ namespace: compose-api-local
 
 images:
   - name: ghcr.io/biosimulations/compose-api
-    newTag: 0.5.0
+    newTag: 0.6.0
 
 resources:
   - alembic-job.yaml

kustomize/overlays/compose-api-local/kustomization.yaml

@@ -5,7 +5,7 @@ namespace: compose-api-local
 
 images:
   - name: ghcr.io/biosimulations/compose-api
-    newTag: 0.5.0
+    newTag: 0.6.0
   - name: docker.io/library/mongo
     newTag: 8.3.11
 

kustomize/overlays/compose-api-rke-db-migration/kustomization.yaml

@@ -5,7 +5,7 @@ namespace: compose-api-rke
 
 images:
   - name: ghcr.io/biosimulations/compose-api
-    newTag: 0.5.0
+    newTag: 0.6.0
 
 resources:
   - alembic-job.yaml

kustomize/overlays/compose-api-rke/kustomization.yaml

@@ -5,7 +5,7 @@ namespace: compose-api-rke
 
 images:
   - name: ghcr.io/biosimulations/compose-api
-    newTag: 0.5.0
+    newTag: 0.6.0
   - name: docker.io/library/mongo
     newTag: 8.3.11
 

pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "compose-api"
-version = "0.5.0"
+version = "0.6.0"
 description = "An API server for reproducible biological workflows and cosimulations."
 authors = [{ name = "Jim Schaff", email = "schaff@uchc.edu" }]
 requires-python = ">=3.13.2,<4.0"