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@eastgenomics

East Genomics

Bringing together genomic medicine across the East Midlands and East of England

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  1. eggd_tso500 eggd_tso500 Public

    Runs the Illumina TSO500 local analysis app.

    Shell 5 2

  2. athena athena Public

    Provides HTML reports with detailed coverage analysis for clinical NGS data.

    HTML 5 2

  3. eggd_mosdepth eggd_mosdepth Public

    mosdepth (DNAnexus Platform App)

    Shell 4

  4. Ploutos Ploutos Public archive

    Code for the DNAnexus billing project.

    Python 4

  5. code_school code_school Public

    HTML 3 1

  6. validate_sample_sheet validate_sample_sheet Public

    Validates Illumina SampleSheet for bcl2fastq / bclconvert

    Python 3 1

Repositories

Showing 10 of 328 repositories
  • eggd_fgbio Public

    DNAnexus app running fgbio tools; v1.0.0: ClipBam overlapping-read-pair clipping for the Atlas PURPLE AMBER input (DI-4247)

    eastgenomics/eggd_fgbio's past year of commit activity
    Shell 0 MIT 0 0 1 Updated Nov 11, 2026
  • eggd_MultiQC_configs Public
    eastgenomics/eggd_MultiQC_configs's past year of commit activity
    0 0 7 1 Updated Nov 11, 2026
  • eggd_conductor Public

    DNAnexus app for automated analysis

    eastgenomics/eggd_conductor's past year of commit activity
    Python 1 MIT 1 32 3 Updated Nov 11, 2026
  • automated-archiving Public

    Python script to monitor archiving on DNANexus

    eastgenomics/automated-archiving's past year of commit activity
    Python 2 0 5 0 Updated Nov 11, 2026
  • eggd_TSO500_reports_workflow Public
    eastgenomics/eggd_TSO500_reports_workflow's past year of commit activity
    1 0 1 0 Updated Nov 11, 2026
  • egg5_dias_CEN_config Public
    eastgenomics/egg5_dias_CEN_config's past year of commit activity
    2 MIT 0 0 0 Updated Nov 11, 2026
  • eggd_conductor_configs Public

    Repository of eggd_conductor app and assay config files

    eastgenomics/eggd_conductor_configs's past year of commit activity
    1 0 9 1 Updated Nov 10, 2026
  • eggd_dias_batch Public

    DNAnexus app to launch reports workflows for Dias pipeline

    eastgenomics/eggd_dias_batch's past year of commit activity
    Python 1 1 6 0 Updated Nov 10, 2026
  • egg4_dias_TWE_config Public

    Config for the Dias TWE assay

    eastgenomics/egg4_dias_TWE_config's past year of commit activity
    1 0 0 0 Updated Nov 10, 2026
  • eggd_purple_plotter Public

    A DNAnexus app that takes per-sample outputs from the PURPLE/AMBER/CNVkit pipeline and generates a fully self-contained IGV.js HTML copy-number viewer

    eastgenomics/eggd_purple_plotter's past year of commit activity
    Python 0 0 8 0 Updated Nov 10, 2026
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