Issues

• estimate_balancing_weight fails with pandas 3: output array is read-only

  gao-lab/GLUE#140 · Filter by author Zethson opened on Sep 30, 2026

• move leidenalg to optional dependencies

  gao-lab/GLUE#139 · Filter by author Zethson opened on Sep 30, 2026

• get_metacells does not returns information regarding barcodes included in each Metacell

  gao-lab/GLUE#138 · Filter by author simozhou opened on Apr 15, 2026

• Available for ADT and scATAC-seq data?

  gao-lab/GLUE#137 · Filter by author whitezb12 opened on Jan 31, 2026

• Comparison of GLUE and OmniCLIC on RNA+ATAC Data Sets

  gao-lab/GLUE#136 · Filter by author linjing-lab opened on Jan 4, 2026

• ValueError: Not all modality features exist in the graph!

  gao-lab/GLUE#134 · Filter by author DruncBread opened on May 16, 2025

• scglue.models.fit_SCGLUE error with torch 2.7.0

  gao-lab/GLUE#131 · Filter by author tovahmarkowitz opened on Apr 28, 2025
  1

• Whole_Blood.v8.signif_variant_gene_pairs.bed.gz cannot be downloaded

  gao-lab/GLUE#130 · Filter by author rongyua opened on Apr 8, 2025

• AttributeError: module 'anndata._core.sparse_dataset' has no attribute 'SparseDataset'

  gao-lab/GLUE#129 · Filter by author NusrathAlasseri opened on Mar 13, 2025
  1

• Error on scglue.genomics.rna_anchored_guidance_graph

  gao-lab/GLUE#128 · Filter by author peiruzhang opened on Mar 13, 2025

• Question about Hi-C/ChIP-seq data

  gao-lab/GLUE#126 · Filter by author goodstudy28 opened on Nov 10, 2024

• An error in running permutation test for multi-omic data

  gao-lab/GLUE#125 · Filter by author HelloWorldLTY opened on Aug 25, 2024

• Array of nans when running scglue.models.fit_SCGLUE

  gao-lab/GLUE#123 · Filter by author sanikadeshmukh3 opened on Aug 11, 2024
  2

• scglue.data.get_gene_annotation gives many NaN values.

  gao-lab/GLUE#122 · Filter by author oldvalley49 opened on Jul 18, 2024
  5

• Error on scglue.genomics.rna_anchored_guidance_graph: not all features are strand specific!

  gao-lab/GLUE#121 · Filter by author Freedom04 opened on Jun 9, 2024
  2

• How to improve integration

  gao-lab/GLUE#120 · Filter by author fe4960 opened on May 22, 2024
  2

• get_gene_annotation returns Nan

  gao-lab/GLUE#118 · Filter by author fafa92 opened on Apr 17, 2024
  3

• Question about preprocessing ATAC-Seq

  gao-lab/GLUE#116 · Filter by author luglilab opened on Apr 3, 2024
  4

• Error on scglue.genomics.rna_anchored_guidance_graph

  gao-lab/GLUE#109 · Filter by author travilucas opened on Dec 11, 2023
  4

• Does LSI require all peaks for optimal results, especially when dealing with ultra-scale datasets?

  gao-lab/GLUE#108 · Filter by author YH-Zheng opened on Nov 29, 2023
  5

• Input contains NaN when LSI

  gao-lab/GLUE#103 · Filter by author cynthier opened on Nov 16, 2023
  11

• Can glue generate cross modality data？

  gao-lab/GLUE#102 · Filter by author GlancerZ opened on Nov 15, 2023
  1

• Error in bash

  gao-lab/GLUE#101 · Filter by author Khalid-Usman opened on Nov 14, 2023
  7

• ValueError when using LSI

  gao-lab/GLUE#92 · Filter by author MohammadIzadi opened on Sep 9, 2023
  1

• Question about PairedSCGLUEModel

  gao-lab/GLUE#87 · Filter by author alitinet opened on Jul 27, 2023
  6