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@jcm-sci

jcm-sci

Decision support and principled inference for partially observed systems across earth, environmental, and health sciences — determining what actions to take, what experiments to run, and what measurements are worth collecting when interventions are costly and uncertainty is unavoidable.

Website · Publications · Projects

Focus Areas

  • Decision support under partial observability — surveillance design, forecasting pipelines, intervention evaluation, resource allocation
  • Model criticism & evaluation — structured observables, Pareto-optimal configuration selection, Bayesian stacking, proper scoring rules
  • Scientific AI/ML — physics-embedded surrogates, lawful learning, generative model design
  • Operator-partitioned solvers — IMEX/PDE operator splitting, trait-structured dynamical systems
  • Bayesian latent variable models — variational PCA, posterior predictive testing, rank selection
  • Operational forecasting — infectious disease scenario modeling, ensemble calibration, intervention timing

Packages

Package Language Description
trade-study Python Released design and evaluation framework with protocol-driven simulators, proper scoring rules, Pareto analysis, and stacking

Inactive Design Scaffolds

The following repositories contain placeholder modules rather than usable implementations. They are retained only as possible starting points for future Julia work and should not be installed as packages.

Repository Status
TradeStudy.jl Inactive scaffold for a possible trade-study port
OpSystem.jl Inactive scaffold for a possible op_system port
OpEngine.jl Inactive scaffold for a possible op_engine port
ScoringRules.jl Inactive scaffold; no scoring-rule implementation is present

Related Work (other orgs)

Package Org Description
VBPCApy yoavram-lab Variational Bayesian PCA for incomplete data with full posterior uncertainty
pp-eigentest yoavram-lab Private pre-release work on posterior-predictive signal-rank selection
op_engine ACCIDDA Array-API-aware operator-partitioned solver with explicit, IMEX, implicit, and stochastic methods
op_system ACCIDDA Restricted expression parser and typed-IR compiler for structured dynamical systems
flepimop2 ACCIDDA Configuration-driven orchestration and provider framework for infectious-disease modeling campaigns

Popular repositories Loading

  1. .github .github Public

    Organization profile and community health files

  2. python-package-template python-package-template Public template

    Template for Python scientific packages (uv + ruff + just + GitHub Actions)

    Just

  3. julia-package-template julia-package-template Public template

    Template for Julia scientific packages (justfile + GitHub Actions CI)

    Just

  4. trade-study trade-study Public

    Multi-objective trade-study orchestration with proper scoring rules, Pareto optimization, and Bayesian stacking for systematic model evaluation and design-space exploration.

    Python

  5. TradeStudy.jl TradeStudy.jl Public

    Inactive Julia design scaffold; no usable implementation. See jcm-sci/trade-study.

    Just

  6. OpEngine.jl OpEngine.jl Public

    Inactive Julia design scaffold; no usable implementation. See ACCIDDA/op_engine.

    Just

Repositories

Showing 8 of 8 repositories

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