Issues

• tdb/vidrl_upload: Improve human serum reference parsing

  enhancement
  nextstrain/fauna#184 · Filter by author joverlee521 opened on Mar 19, 2026

• Pandas and numpy version incompatibilities

  bug
  nextstrain/fauna#171 · Filter by author jameshadfield opened on Dec 2, 2024
  3

• Generate list of new titers references on each new ingest

  enhancement
  nextstrain/fauna#163 · Filter by author huddlej opened on Sep 23, 2024
  1

  

• Decouple data curation and upload

  nextstrain/fauna#162 · Filter by author joverlee521 opened on Sep 11, 2024
  4

• Revisit ingestion of VIDRL flat files

  nextstrain/fauna#161 · Filter by author joverlee521 opened on Sep 11, 2024
  7

  

• Parse VIDRL human sera pool measurements

  enhancement
  nextstrain/fauna#158 · Filter by author huddlej opened on Aug 14, 2024
  2

  

• Publish to pypi and then bioconda

  nextstrain/fauna#156 · Filter by author corneliusroemer opened on Jul 17, 2024
  1

• Revisit tdb/upload's index_fields

  nextstrain/fauna#144 · Filter by author joverlee521 opened on Oct 25, 2023
  1

• Support ingest of individual-level human serology data for seasonal flu viruses

  enhancement
  nextstrain/fauna#142 · Filter by author huddlej opened on Oct 11, 2023

• Geolocation assignments fail for duplicate location names

  bug
  nextstrain/fauna#135 · Filter by author joverlee521 opened on Dec 16, 2022
  2

  

• Switch out xlrd

  enhancement
  nextstrain/fauna#113 · Filter by author joverlee521 opened on Feb 15, 2022
  1

• argument parser in upload.py

  nextstrain/fauna#83 · Filter by author rneher opened on Apr 2, 2018
  3

• fauna uploads fail in python 3 unicode error

  nextstrain/fauna#81 · Filter by author lmoncla opened on Jan 16, 2018
  1

• Suggest using direct clinical sample sequence for MEX_CIENI551 Zika genome

  nextstrain/fauna#75 · Filter by author alliblk opened on Sep 26, 2017

• implement caching for geo lookups

  nextstrain/fauna#72 · Filter by author jameshadfield opened on Sep 25, 2017
  1

• Update download_all to work with segments

  nextstrain/fauna#65 · Filter by author trvrb opened on Jun 22, 2017
  2

  

• Allow uploads of non-HI assay types.

  nextstrain/fauna#50 · Filter by author barneypotter24 opened on Feb 10, 2017
  3

• Sort out why Texas/50 is being dropped

  nextstrain/fauna#48 · Filter by author trvrb opened on Feb 10, 2017
  1

  

• Pull genbank files with Accession numbers

  nextstrain/fauna#33 · Filter by author chacalle opened on Sep 2, 2016
  12